fsl (4.1.6-1) unstable; urgency=low

  * New upstream release. Merged various patches with upstream.
    Closes: #581095.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon, 05 Jul 2010 10:44:16 -0400

fsl (4.1.5.2-3) unstable; urgency=low

  * Switch to source package format 3.0 (quilt). Convert all Git
    feature/bugfix branches into quilt patch series.
  * Remove obsolete dh_desktop call from debian/rules.
  * Add debhelper dependency variables to fsl-doc control stanza.
  * No longer compile with '-Wl,--as-needed' to prevent symbols from
    libcprob to be substituted by external replacements.
  * Updated and extended the package description.
  * Changed maintainer to NeuroDebian. Moved myself into uploaders and
    added Yaroslav Halchenko.
  * Fix syntax error in 'rotate_bvecs' script.

 -- Michael Hanke <michael.hanke@gmail.com>  Sun, 02 May 2010 19:19:25 -0400

fsl (4.1.5.2-2) unstable; urgency=low

  * Fix broken fslmaths option (-tfce). Thanks to Clark Johnson and Matthew
    Webster.
  * Bumped Standard version to 3.8.4.0 -- no changes necessary.
  * Remove support for octave2.1 dependency and allow for octave3.2.
    Thanks to Thomas Weber for the report (Closes: #572763).

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 06 Mar 2010 08:28:38 -0500

fsl (4.1.5.2-1) unstable; urgency=low

  * New upstream service release. Fixes issues with broken FNIRT scripts.
  * Include `fslecho` script in the binary package (Closes: #567133). Thanks to
    Petr Hlustík for reporting.

 -- Michael Hanke <michael.hanke@gmail.com>  Thu, 28 Jan 2010 09:27:57 -0500

fsl (4.1.5-1) unstable; urgency=low

  * New upstream release.
    * An issue with Randomise "pausing" has been fixed.
    * There are some improvements to the bedpostx monitor script.
    * Large speedup for invwarp by automatically adjusting the useful FOV
      internally (no cropping of the original images needed).
    * Non-linear initialisation in bedpostx to allow better convergence of
      the MCMC chains
    * Some improvements and new options in Probtrackx:
      - allows to input nonlinear (FNIRT) warpfield instead of FLIRT
        matrices
      - bug fix in initial fibre selection
      - tracking from freesurfer cortical surface (into the brain)
      - tracking from random locations within a seed voxel
  * No longer compile with '-ansi -pedantic', since a significant part of the
    sources is actually not ANSI compliant (Closes: #546003).
  * Don't use roundl() to round doubles in src/basisfield/splinefield.cpp to
    prevent FTFBS on ARMEL (Closes: #513272).
  * Bumped Standard version to 3.8.3.0 -- no changes necessary.
  * New config variable FSLPARALLEL. If set, FSL will submit jobs to a running
    Sun Gridengine. By default, this setting is disabled in /etc/fsl/fsl.sh.
    (Closes: #546238). Added suggested package 'gridengine-client'.
    See README.Debian for more information.
  * Remove all menu items of GUI-apps that are directly accessible from the
    central FSL GUI. The menu got too crowded with all the different FSL
    items.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 22 Jan 2010 18:01:24 -0500

fsl (4.1.4-2) unstable; urgency=low

  * Include a number of upstream patches that went into 4.1.4 after the
    4.1.4-1 package got uploaded.
  * Revert from -O3 to -O2 for compiler optimizations. -O3 seems to cause
    trouble for some pieces (miscmaths, avwutils) on some architectures.

 -- Michael Hanke <michael.hanke@gmail.com>  Wed, 03 Jun 2009 20:52:45 +0200

fsl (4.1.4-1) unstable; urgency=low

  * New upstream release.
  * Fixed bashisms (Closes: #530084).

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 23 May 2009 11:47:34 +0200

fsl (4.1.3-1) unstable; urgency=low

  * New Upstream Version.
  * Reverse the order of the octave*-headers build-dependency alternatives
    to account for the removal of octave2.1-headers from unstable
    (Closes: #523826).
  * Do not build-depend on FSLView anymore. That setup was way to complex and
    error-prone.
  * Bumped Standard version to 3.8.1 -- no changes necessary.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon, 27 Apr 2009 22:13:12 +0200

fsl (4.1.2-2) unstable; urgency=low

  * Use internals libs compiled by the fslview package, instead of building
    them again from fsl sources.
  * Added 'XS-DM-Upload-Allowed: yes' in debian/control.
  * Install fslio im* scripts.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 07 Feb 2009 10:33:03 +0100

fsl (4.1.2-1) unstable; urgency=low

  * New Upstream Version.
  * Added POSSUM installation directory to environment setup -- it refused to
    work otherwise.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 05 Dec 2008 10:23:08 +0100

fsl (4.1.1-2) unstable; urgency=low

  * Compile and use fslio library version that comes with the FSL sources.
    This fixes a bug when FSL 4.1 is used with ANALYZE images, which it
    cannot reliably do anymore (only NIfTI is supported). Also updated the
    configuration documentation (in /etc/fsl/fsl.sh) accordingly.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 24 Oct 2008 12:27:38 +0200

fsl (4.1.1-1) unstable; urgency=low

  * New Upstream Version fixing a number of bugs in FEAT, FDT and FNIRT.
  * Updated repackaging. Repackaging procedure was changed to keep fslio in
    the package. This version contains more up-to-date scripts than the ones
    in the nifticlibs package.
  * Install im* and tcl scripts from local fslio sources, instead of using the
    (discontinued) ones in the nifticlibs package. Therefore also removing
    dependency to 'nifti-bin'.
  * Do not install installer script -- useless on Debian (Closes: #489596).
  * Remove broken get-orig-source target from debian/rules. The repackaging
    procedure is implemented in the 'repackage-fsl' script shipped with the
    fslview package.

 -- Michael Hanke <michael.hanke@gmail.com>  Thu, 16 Oct 2008 14:28:34 +0200

fsl (4.1.0-1) unstable; urgency=low

  * New Upstream Version.
  * Bumped Standard version to 3.8.0 -- no changes necessary.

 -- Michael Hanke <michael.hanke@gmail.com>  Thu, 14 Aug 2008 13:14:53 +0200

fsl (4.0.4-2) unstable; urgency=low

  * Alternatively use octave3.0-headers (instead of just octave2.1-headers)
    package to determine octave paths.

 -- Michael Hanke <michael.hanke@gmail.com>  Wed, 21 May 2008 09:20:29 +0200

fsl (4.0.4-1) unstable; urgency=low

  * New bugfix release.
  * Install missing IRTK configuration, which are not covered by the IRTK
    liccense.

 -- Michael Hanke <michael.hanke@gmail.com>  Tue, 01 Apr 2008 11:04:19 +0200

fsl (4.0.3-2) unstable; urgency=low

  * Applied upstream patch to fix some problems with boolean commandline
    options.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 09 Feb 2008 13:15:21 +0100

fsl (4.0.3-1) unstable; urgency=low

  * New upstream release. Some bugfixes in bet2 and possum.
  * Removed all fftw-related stuff from the build-dependencies. Apparently it
    is not necessary anymore. Thanks to Paul Brossier for reporting
    (Closes: #460270).

 -- Michael Hanke <michael.hanke@gmail.com>  Wed, 23 Jan 2008 17:09:38 +0100

fsl (4.0.2-3) unstable; urgency=low

  * Fixed some bugs for GCC 4.3 compatibility.
  * Updated build-dependencies for libnifti transition.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 05 Jan 2008 15:26:59 +0100

fsl (4.0.2-2) unstable; urgency=low

  * Refurbished debian/rules. Now honours 'noopt' and builds with debugging
    symbols by default.
  * Make Debian diff less intrusive by moving more logic into debian/rules.
  * Improve LD_LIBRARY_PATH handling by preventing trailing colons.
  * Let fsl-doc depend on fslview-doc to prevent dangling symlink.
  * Fixed location of lintian override.
  * Updated and completed list of licenses in debian/copyright.
  * Removed empty directories from the fsl-doc package.
  * Placed fsl-doc package in section non-free/doc.
  * Bumped Standard version to 3.7.3 -- no changes necessary.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 21 Dec 2007 10:56:09 +0100

fsl (4.0.2-1) unstable; urgency=low

  * New upstream bugfix release.
    - Susan: multiple performance improvements
    - SienaX: bugfix in sienax regarding the -lm option
    - Avwutils: minor fixes to fslmaths and fslsplit
    - Feat5: multiple minor fixes
    - Film: minor fix
    - Flame: bugfix in the multiple-group-variances estimation
    - Fdt: minor changes and fixes
    - Miscvis: fixed Renderstats gui
  * Use new-style Homepage field in debian/control.
  * Replace deprecated 'Source-Version' substvar with 'source:Version' in
    debian/control.
  * Removed executable permissions from all '.gif' files.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 16 Nov 2007 10:13:17 +0100

fsl (4.0.1-3) unstable; urgency=low

  * Added bc and dc to the dependencies.
  * Adjusted package build-deps to new libfftw3-dev package in Debian lenny.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon, 12 Nov 2007 22:38:01 +0100

fsl (4.0.1-2) unstable; urgency=low

  * Added a lintian override for the Runtcl syntax warning. This file is
    actually a mixed sh and tclsh script.

 -- Michael Hanke <michael.hanke@gmail.com>  Wed,  5 Sep 2007 22:28:01 +0200

fsl (4.0.1-1) unstable; urgency=low

  * New upstream bugfix release.
  * BET can now store the brain surface in VTK format.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 01 Sep 2007 10:53:23 +0200

fsl (4.0.0-2) unstable; urgency=low

  * Bugfix: fsl_sub made use of non-POSIX operator while interpreter was set
    to /bin/sh. This caused the script to fail on Ubuntu systems that have
    dash as their default shell.

 -- Michael Hanke <michael.hanke@gmail.com>  Thu, 30 Aug 2007 08:44:46 +0200

fsl (4.0.0-1) unstable; urgency=low

  * New upstream release.
  * Repackaged the FSL source tarball due to its size and the mixture of
    licenses and split it into three independent source packages: 'fsl' contains
    all non-free source code, 'fslview' contains FSLView and all other
    DFSG-compliant sources and 'fsldata' contains the arch-independent datasets
    (>900MB).
  * Conflict with old fsl-fslview package and depend on the successor
    'fslview'.
  * Debian diff is now handled with a GIT repository. Build-dependency to
    dpatch is obsolete.
  * All internal libraries are compiled as shared libraries with
    -W,l--no-undefined to be able to detect unresolved symbols that have been
    an issue in the past. This also reduces the size of the binary package
    significantly.
  * FSL now uses libfslio, libniftiio and the im* tools from the corresponding
    Debian packages instead of a compiling a local copy.
  * Added 'dicomnifti' to the list of the suggested packages.
  * Removed obsolete runtime dependency to tix, imagemagick and gnuplot.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 17 Aug 2007 14:38:14 +0200

fsl (3.3.11-2) unstable; urgency=low

  * Removed manpage links of FSL internal cmdline tools to prevent namespace
    conflicts.
  * Disabled FSL developer variables in /etc/fsl/fsl.conf to prevent error
    messages when the file is sourced, but no compiler is installed.
  * Added wrapper script (similar to ssh-argv0) to be able to automatically
    source the FSL configuration on startup. This adds the opportunity to
    include menu and .desktop files.
  * Add proper menu and .desktop files for all FSL GUI applications.
  * Added build-depend on imagemagick to be able to generate a 32x32 icon for
    the FSL menu entries from included artwork.
  * Renamed fsl config file from fsl.conf to fsl.sh. This is done to reduce
    the differences between upstream releases and the Debian package.
    A preinst script was added to move old config files on package upgrades.
    The new behavior is noted in debian/NEWS.
  * Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
  * Added comments about the CEPHES and Susan licensing to debian/copyright.
  * Added a link to the FSLView binary to /usr/share/fsl/bin, because Nudge
    was complaining about not beeing able to find it. Thanks to Yaroslav
    Halchenko for pointing at this issue.
  * Added manpage for fslview.

 -- Michael Hanke <michael.hanke@gmail.com>  Tue, 01 May 2007 19:53:06 +0200

fsl (3.3.11-1) unstable; urgency=low

  * New upstream release. Fixes another minor randomize bug.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 31 Mar 2007 19:32:42 +0200

fsl (3.3.10-1) unstable; urgency=low

  * New upstream release. Fixes a bug in randomise.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 16 Mar 2007 18:38:08 +0100

fsl (3.3.9-1) unstable; urgency=low

  * New upstream release.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 16 Feb 2007 13:03:14 +0100

fsl (3.3.8-1) unstable; urgency=low

  * New upstream release.
  * Minor bugfixes fixes to avwmerge++ and avwmaths++.
  * Modified FSLView makefile to fix FTBFS due to missing fslio linrary.
  * Added debian/backports to the source package. It contains a patch that
    disables the fslview package when backporting to sarge using pbuilder-ssh.

 -- Michael Hanke <michael.hanke@gmail.com>  Fri, 12 Jan 2007 10:42:06 +0100

fsl (3.3.7-3) unstable; urgency=low

  * Added missing changelog entries for 3.3.7-2.
  * Renamed the fsl-sbrain package to fsl-data.
  * Added missing licenses to debian/copyright.
  * Moved default FEAT configuration to /etc/fsl.
  * Temporarily added libvtk5-qt3 to the build-depends to work-around
    bug #389521.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon, 30 Oct 2006 11:02:14 +0100

fsl (3.3.7-2) unstable; urgency=low

  * Include FSLView docs in the fsl-doc package.
  * Added patch to fix FTBFS due to an issue with template instantiation.
    Thanks to Yaroslav Halchenko.
  * Minor enhancement for FSLView compilation (force Qt3 with Qt4 also
    present).
  * Fixed missing example_FA_target in $FSLDIR/etc/standard.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat,  9 Sep 2006 09:51:41 +0200

fsl (3.3.7-1) unstable; urgency=low

  * New upstream release.
  * Added FSLView package.

 -- Michael Hanke <michael.hanke@gmail.com>  Sun, 30 Jul 2006 13:56:52 +0200

fsl (3.3.6-2) unstable; urgency=low

  * Bumped Standards-Version to 3.7.2; no changes necessary.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon,  3 Jul 2006 21:37:31 +0200

fsl (3.3.6-1) unstable; urgency=low

  * New upstream release.

 -- Michael Hanke <michael.hanke@gmail.com>  Sun, 18 Jun 2006 08:18:51 +0200

fsl (3.3.5-2) unstable; urgency=low

  * Added patch for gcc4.1 compatibility (Thanks to Mark Jenkinson).

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 10 Jun 2006 09:02:11 +0200

fsl (3.3.5-1) unstable; urgency=low

  * New upstream release

 -- Michael Hanke <michael.hanke@gmail.com>  Tue,  2 May 2006 09:32:13 +0200

fsl (3.3.4-1) unstable; urgency=low

  * New upstream release (missed 3.3.3). FSLView source code is now included,
    but FSLView still cannot be build, because it build-depends on VTK 5.0.
    No Debian package of this version is currently available.
  * Added build conflict to libnifti0-dev. FSL sources contain an incompatible
    fork of this library. This situation should vanish with the next major
    release.

 -- Michael Hanke <michael.hanke@gmail.com>  Wed, 26 Apr 2006 10:51:08 +0200

fsl (3.3.2-1) unstable; urgency=low

  * New upstream release.
  * Moved all binaries to /usr/lib/fsl after experiencing name clashes with
    other packages.

 -- Michael Hanke <michael.hanke@gmail.com>  Tue, 11 Apr 2006 16:20:27 +0200

fsl (3.3.0-1) unstable; urgency=low

  * New upstream version.
  * Split standard space brain data into a separate package.
  * Made matlab m-files available for Octave.

 -- Michael Hanke <michael.hanke@gmail.com>  Sat, 18 Mar 2006 23:56:31 +0100

fsl (3.2beta-4) unstable; urgency=low

  * Added the possibility to define additional compiler flags for
    arch-dependend optimization by defining them in the DEB_ARCH_OPT_FLAGS
    environment variable.

 -- Michael Hanke <michael.hanke@gmail.com>  Thu, 23 Feb 2006 20:50:57 +0100

fsl (3.2beta-3) unstable; urgency=low

  * Split the dpatch patches into several smaller parts.
  * Added patches to replace most of the deprecated headers.
  * Improved patch to FAST for GCC4 compatiility.
  * Removed libcprob and newran from the tarball, since they are unnecessary
    for building FSL.
  * Added patch to libvis that makes it possible to use a dependency to the
    official Debian libgdchart-gd2 package instead of compiling the custom
    version from the FSL source tarball.
  * Switch package dependency for newmat to a package that provides a shared
    library (Thanks to Philippe Coval).

 -- Michael Hanke <michael.hanke@gmail.com>  Sun, 19 Feb 2006 22:05:24 +0100

fsl (3.2beta-2) unstable; urgency=low

  * Added build-dependency to libnewmat10-dev and stopped compiling the
    included version.

 -- Michael Hanke <michael.hanke@gmail.com>  Mon,  2 Jan 2006 14:46:14 +0100

fsl (3.2beta-1) unstable; urgency=low

  * Initial Release (Closes: #332666).
  * Upstream tarball was repackaged, because it contained lots of binaries of
    software available as proper Debian packages (see get-orig-source target
    in debian/rules).
  * Includes some fixes for compatibility with GCC4 (thanks to Andre Piel).

 -- Michael Hanke <michael.hanke@gmail.com>  Wed, 28 Dec 2005 17:11:34 +0100

